MN967479.1 | ICGRC

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Summary

Annotations

This record has the following annotations.
Term	Name	Definition
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai]
GO:0016829	lyase activity
GO:0010333	terpene synthase activity	Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators]
INTERPRO:IPR008930	Terpenoid_cyclase/PrenylTrfase
INTERPRO:IPR036965	Terpene_synth_N_sf
INTERPRO:IPR008949	Isoprenoid_synthase_dom_sf
INTERPRO:IPR001906	Terpene_synth_N
INTERPRO:IPR005630	Terpene_synthase_metal-bd

Click a tab below to view blast alignments.

blastn of TPS CDS against pkv5 genome

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 genome
Display provided by the neXtProt Feature Viewer

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BLAST of MN967479.1 vs. Genbank
Match Name: AGQN03004425.1
Description: Cannabis sativa cultivar Purple Kush 004429F, whole genome shotgun sequence

HSP 1 Score: 575.428 bits (311), Expect = 5.359e-162
Identity = 367/395 (92.91%), Postives = 367/395 (92.91%), Query Frame = 1

Query:      414 AGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGT 808
                ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |  |||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct:    66427 AGATATATTTGACAAGTTCAAAGATGAGAATGGCAACTTTAAAGAATGTTTGGCGAGTGACACCGTTGGTTTGCTTAGCTTATATGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATTTACTAGATGAAGCCCTTTCTTTCACTACCAAACACCTAACTGAATTTTTGGAAAATAATAAAAAAGAACACCCCAATGATGATCCATTATCAAAGGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTCCATGCAAGGTATTTCATTTCAATATATGAAAAAGATGCCTCACATAACAAAGTATTGCTACAACTTGCAAAGTTAGATTTCAATCTATTACAATCCATGCACAAAAAGGAGCTTAGTGAAATCTCAAGGT 66033

HSP 2 Score: 396.303 bits (214), Expect = 4.478e-108
Identity = 220/223 (98.65%), Postives = 220/223 (98.65%), Query Frame = 1

Query:      805 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGT 1027
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct:     8804 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACATAAGCTCCTTATTGAAGCAATTGACAGGT 8582

HSP 3 Score: 374.144 bits (202), Expect = 2.098e-101
Identity = 216/223 (96.86%), Postives = 216/223 (96.86%), Query Frame = 1

Query:      805 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGT 1027
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||
Sbjct:    65929 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCACTTTCCTCAATCGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACATAAGCTCCTTATTGAAGCAATTGATAGGT 65707

HSP 4 Score: 154.392 bits (83), Expect = 2.976e-35
Identity = 112/125 (89.60%), Postives = 112/125 (89.60%), Query Frame = 1

Query:      689 ATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAA-----GTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGT 808
                |||||||||||||||||||||||||||| ||||||||||||     |||||| | |||||||||||||||||||||||| |||| |||| | ||||||||||||| |||||||||||||||||||
Sbjct:     9031 ATTTCATTTCAATATATGAAAAAGATGCCTCACATAACAAATTAAAGTATTGCTACAACTTGCAAAGTTAGATTTCAATCTATTACAATCCTTGCACAAAAAGGAGCTTAGTGAAATCTCAAGGT 8907

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BLAST of MN967479.1 vs. Genbank
Match Name: AGQN03002522.1
Description: Cannabis sativa cultivar Purple Kush 002526F, whole genome shotgun sequence

HSP 1 Score: 573.582 bits (310), Expect = 1.927e-161
Identity = 367/395 (92.91%), Postives = 367/395 (92.91%), Query Frame = 1

Query:      414 AGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGT 808
                ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |  |||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct:   105179 AGATATATTTGACAAGTTCAAAGATGAGAATGGCAACTTTAAAGAATGTTTGGCGAGTGACACCGTTGGTTTGCTTAGCTTATATGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATTTACTAGATGAAGCCCTTTCTTTCACTACCAAACACCTAACTGAATTTTTGGAAAATAATAAAAAAGAACA-CCCAATGATGATCCATTATCAAAGGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTCCATGCAAGGTATTTCATTTCAATATATGAAAAAGATGCCTCACATAACAAAGTATTGCTACAACTTGCAAAGTTAGATTTCAATCTATTACAATCCATGCACAAAAAGGAGCTTAGTGAAATCTCAAGGT 105572

HSP 2 Score: 464.629 bits (251), Expect = 1.210e-128
Identity = 267/275 (97.09%), Postives = 267/275 (97.09%), Query Frame = 1

Query:      141 TTATAAACAAGGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTTTAG 415
                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct:    98461 TTATAAACAAGGCCAAGTTGAAGAATTGAAAAAAGTGGTAAGAAAGGAGATATTTGGAGAATTCTTATGTGATGATTGGAGTAATCGATTGAAGTTAATTGATGTGGTGCAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAACACATTTACAACAAAATAAGCATTAATGATAATAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATATAGGGTTTCTTTAG 98735

HSP 3 Score: 374.144 bits (202), Expect = 2.098e-101
Identity = 216/223 (96.86%), Postives = 216/223 (96.86%), Query Frame = 1

Query:      805 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGT 1027
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||
Sbjct:   105676 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCACTTTCCTCAATCGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACATAAGCTCCTTATTGAAGCAATTGATAGGT 105898

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BLAST of MN967479.1 vs. Genbank
Match Name: AGQN03007528.1
Description: Cannabis sativa cultivar Purple Kush 007533F, whole genome shotgun sequence

HSP 1 Score: 455.396 bits (246), Expect = 7.284e-126
Identity = 266/275 (96.73%), Postives = 266/275 (96.73%), Query Frame = 1

Query:      141 TTATAAACAAGGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTTTAG 415
                ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct:     3068 TTATAAACAAGGCCAAGTTGAAGAATTGAAA-AAGTGGTAAGAAAGGAGATATTTGGAGAATT--TATGTGATGATTGGA-TAATCGATTGAAGTTAATTGATGTGGTGCAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAACACATTTACAACAAAATAAGCATTAATGATAATAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATATAGGGTTTCTTTAG 2798

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BLAST of MN967479.1 vs. Genbank
Match Name: CM010796.2
Description: Cannabis sativa cultivar Purple Kush chromosome 5, whole genome shotgun sequence

HSP 1 Score: 451.703 bits (244), Expect = 9.422e-125
Identity = 338/385 (87.79%), Postives = 338/385 (87.79%), Query Frame = 1

Query:      414 AGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAA 798
                |||||||||||| || |||||||||||| |||| ||||||||| |||| ||||  ||||| | | |  |||||||||||||||| || |||||||||||||||||||||||||||||| | || |||||||| ||  ||||||| || |||||||||| | | |||||||| || || ||| || | |||   || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||| |||| |||||||||||||||||||| |||||||||
Sbjct: 52164440 AGATATATTTGAAAAATTCAAAGATGAGGATGGGAACTTTAAAAAATGCTTGGTAAGTGATACCCTTGGTTTGCTTAGCTTATATGAAGCCTCACATTTGAGCTGTGTTGGAGAAAATATACTTGATGAAGCACTTGCTTTCACAACAACACACCTAAATGAGTTTTTGGCGAAGAAAAAAGAACACCATGAAGACGATGATCCATTATCGAAAGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTAAATCTTCATGCAAGGCATTTCATTTCGATATATGAAAAAGATGCCTCACATAACAAAGTATTGTTACAACTTGCAAAATTAGATTTTAATCTATTACAATGCATGCACAAAAAGGAGCTTAGTGAA 52164824

HSP 2 Score: 407.383 bits (220), Expect = 2.069e-111
Identity = 333/389 (85.60%), Postives = 333/389 (85.60%), Query Frame = 1

Query:      414 AGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACA-TCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATC 801
                |||||||||| | || |||||||||||| |||||||||||||| |||||||||  ||||| | || |  |||||||||||||||| || |||||||||||||| |||| |||||||||| | || |||||||| ||  ||||||| || |||||||||| | | |||||||| || || ||| || | |||   || |||||||||||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||| ||| |||| |||| | | ||||||||||| ||||||||||||
Sbjct: 52215615 AGATATATTTAAAAAATTCAAAGATGAGGATGGAAACTTTAAAAAATGTTTGGTAAGTGATACTC-TTGGTTTGCTTAGCTTATATGAAGCCTCACATTTGAGTTGTGGTGGAGAAAATATACTTGATGAAGCACTTGCTTTCACAACAACACACCTAAATGAGTTTTTGGCGAAGAAAAAAGAACACCATGATGACGATGATCCATTATCGAAAGAAATATATCGTGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATACTAAGCATTTCATTTCGATATACGAAAAAGATGCCTCACATAACAAAGTATTGCTACAACTTGCAAAGTTAGATTTTAATCTATTACAATCCCTACACAAAAAGGAGCTTAGTGAAATC 52215228

HSP 3 Score: 224.565 bits (121), Expect = 2.236e-56
Identity = 189/223 (84.75%), Postives = 189/223 (84.75%), Query Frame = 1

Query:      805 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGT 1027
                ||||||||||| |||| | ||  || ||| || || || ||||||||| |||| |||||||| || ||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||  || ||||||||  || |||||||||||||||||||||||||| ||||||| | ||||||||||||| | ||||| | | | |||||||| ||||
Sbjct: 52214642 AGGTGGTGGAAAGAATCAAACTTTGTACAAAAATTCCCTTTTGCAAGAGATAGAATTGTGGAGCTCTATCTTTGGATGTTAGGAGTCTATTATGAACCCCAATACTCTTTGGCAAGAAATATTTTAGCCAAAATCATAGCTTTTTCCTCAATTGCTGATGATATTTATGATGCATATGGAACATTTGAAGAACTTGAACTCCTAACTCAAGCAATTGAAAGGT 52214420

HSP 4 Score: 202.405 bits (109), Expect = 1.048e-49
Identity = 146/164 (89.02%), Postives = 146/164 (89.02%), Query Frame = 1

Query:      157 GTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTA-TGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAA 319
                ||||| ||||| ||||||||||| ||||  || ||||||||||| |||||| | ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 52162564 GTTGAGGAATTAAAAGAAGTGGTTAGAAGAGAAATATTTGGAGA-TTATTATTATGATGCTTGGAAAAATCAATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAAACTGAAATAGAAAATAAGCTTCAATGCATTTACAACAAAA 52162726

HSP 5 Score: 152.546 bits (82), Expect = 1.070e-34
Identity = 170/212 (80.19%), Postives = 170/212 (80.19%), Query Frame = 1

Query:      202 TTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAAT-AAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTT 412
                ||||||  ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||  | |  || | || ||||||||||  ||  |||  |||| ||  ||  ||  |||||   |||||||||| |||  |  || ||||||||||||||||||||||||  ||||||||||
Sbjct: 52216327 TTATTA--TGATGCTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAAACTGAAATAGAAAATATGATAGAACAAATCTACAACAAAACCAATAATTT-TGAT-CTTCTT--AAGGATGAAGAGTTGCATGATGTTTCCTTGTGGGTTAGACTTCTACGACAACATGGATTTAGGGTTTCTT 52216122

HSP 6 Score: 110.073 bits (59), Expect = 6.533e-22
Identity = 82/93 (88.17%), Postives = 82/93 (88.17%), Query Frame = 1

Query:      202 TTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAAT 294
                ||||||  ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||| | ||||||| |||||
Sbjct: 52206604 TTATTA--TGATGGTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGGCTTATCATTTTGAAACTGAAATAGAAAAT 52206514

HSP 7 Score: 62.0597 bits (33), Expect = 1.855e-7
Identity = 47/54 (87.04%), Postives = 47/54 (87.04%), Query Frame = 1

Query:      347 ATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGAT 400
                |||||  ||| ||| ||| ||||  |||||||||||||||||||||||||||||
Sbjct: 52206476 ATGAAGATTTACATCATGTTTCTGATCGGTTTAGACTTCTACGACAACATGGAT 52206423

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BLAST of MN967479.1 vs. Genbank
Match Name: CM010792.2
Description: Cannabis sativa cultivar Purple Kush chromosome 2, whole genome shotgun sequence

HSP 1 Score: 451.703 bits (244), Expect = 9.422e-125
Identity = 338/385 (87.79%), Postives = 338/385 (87.79%), Query Frame = 1

Query:      414 AGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAA 798
                |||||||||||| || |||||||||||| |||| ||||||||| |||| ||||  ||||| | | |  |||||||||||||||| || |||||||||||||||||||||||||||||| | || |||||||| ||  ||||||| || |||||||||| | | |||||||  || || ||| || | |||   ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||| |||| |||||||||||||||||||| |||||||||
Sbjct: 72025061 AGATATATTTGAAAAATTCAAAGATGAGGATGGGAACTTTAAAAAATGCTTGGTAAGTGATACCCTTGGTTTGCTTAGCTTATATGAAGCCTCACATTTGAGCTGTGTTGGAGAAAATATACTTGATGAAGCACTTGCTTTCACAACAACACACCTAAATGAGTTTTTGGTGAAGAAAAAAGAACACCATGAAGATGATGATCCATTATCGAAAGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTAAATCTTCATGCAAGGCATTTCATTTCGATATATGAAAAAGATGCCTCACATAACAAAGTATTGTTACAACTTGCAAAATTAGATTTTAATCTATTACAATGCATGCACAAAAAGGAGCTTAGTGAA 72025445

HSP 2 Score: 429.543 bits (232), Expect = 4.415e-118
Identity = 334/385 (86.75%), Postives = 334/385 (86.75%), Query Frame = 1

Query:      414 AGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAA 798
                |||||||||||| || |||||||| ||| |||| ||||||||| |||| ||||  ||||| | | |  |||||||||||||||| |||||  |||||||||| ||||||||||||||| | || |||||||| ||  ||||||| || |||||| ||||  | ||||||||||  || ||| || | |||   || |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct: 72051752 AGATATATTTGAAAAATTCAAAGACGAGGATGGGAACTTTAAAAAATGCTTGGTAAGTGATACCCTTGGTTTGCTTAGCTTATATGAGGCTACACATTTGAGTTGTGTTGGAGAAAATATACTTGATGAAGCACTTGCTTTCACAACAACACACTTAACCGAGTTTTTGGCAAGGAAAAAAGAATACCATGATGACGATGATCCATTATCAAAAGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTTATTTCGATATATGAAAAAGATGATTCACATAACAAAGTATTGTTACAACTTGCAAAATTAGATTTCAATCTATTACAATGCATGCACAAAAAGGAGCTTAGTGAA 72052136

HSP 3 Score: 224.565 bits (121), Expect = 2.236e-56
Identity = 189/223 (84.75%), Postives = 189/223 (84.75%), Query Frame = 1

Query:      805 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGT 1027
                ||||||||||| |||| | ||  || ||| || || || ||||||||| |||| |||||||| || ||  | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||  || |||||||||||||||||||||||||| ||||||| | ||||||||||||| | ||||| | | | |||||||| ||||
Sbjct: 72110059 AGGTGGTGGAAAGAATCAAACTTTGTACAAAAATTCCCTTTTGCAAGAGATAGAATTGTGGAGCTCTATCTGTGGATGTTAGGAGTCTATTATGAACCCCAATACTCTTTGGCAAGAAATATTTTAGTCAAAATCATAGCTTTTTCCTCAATTGCTGATGATATTTATGATGCATATGGAACATTTGAAGAACTTGAACTCCTAACTCAAGCAATTGAAAGGT 72109837

HSP 4 Score: 191.325 bits (103), Expect = 2.268e-46
Identity = 144/164 (87.80%), Postives = 144/164 (87.80%), Query Frame = 1

Query:      157 GTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTA-TGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAA 319
                |||||  |||| ||||||||||| ||||  || ||||||||||| |||||| | ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 72023131 GTTGAGAAATTAAAAGAAGTGGTTAGAAGAGAAATATTTGGAGA-TTATTATTATGATGCTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAAACTGAAATAGAAAATAAGCTTCAATGCATTTACAACAAAA 72023293

HSP 5 Score: 145.159 bits (78), Expect = 1.791e-32
Identity = 168/211 (79.62%), Postives = 168/211 (79.62%), Query Frame = 1

Query:      202 TTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTT 412
                ||||||  ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||  | |  || | || ||||||||||  |  |||  |||| ||  ||  ||  | ||   ||||||||||| |||  |  || ||||||||||||||||||||||||  ||||||||||
Sbjct: 72111722 TTATTA--TGATGCTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAAACTGAAATAGAAAATATGATAGAACAAATCTACAACAAAACCAATATTTTTGAT-CTTCTT--AAGGAAGA---TTTGCATGATGTTTCCTTGTGGGTTAGACTTCTACGACAACATGGATTTAGGGTTTCTT 72111520

HSP 6 Score: 143.312 bits (77), Expect = 6.441e-32
Identity = 99/110 (90.00%), Postives = 99/110 (90.00%), Query Frame = 1

Query:      210 TGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAA 319
                ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||   ||||||| ||||| ||||||||| ||||||||||||||
Sbjct: 72050758 TGATGCTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAATCTGAAATAGAAAATAAGCTTCAATGCATTTACAACAAAA 72050867

HSP 7 Score: 56.5198 bits (30), Expect = 8.632e-6
Identity = 46/54 (85.19%), Postives = 46/54 (85.19%), Query Frame = 1

Query:      347 ATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGAT 400
                |||||  ||| ||  ||| |||| | ||||||||||||||||||||||||||||
Sbjct: 72050880 ATGAAGATTTACACCATGTTTCTTTACGGTTTAGACTTCTACGACAACATGGAT 72050933


Match Name	Summary
AGQN03004425.1	E-Value: 5.359e-162, PID: 92.91 Description: Cannabis sativa cultivar Purple Kush 004429F, whole genome shotgun sequence [more]
AGQN03002522.1	E-Value: 1.927e-161, PID: 92.91 Description: Cannabis sativa cultivar Purple Kush 002526F, whole genome shotgun sequence [more]
AGQN03007528.1	E-Value: 7.284e-126, PID: 96.73 Description: Cannabis sativa cultivar Purple Kush 007533F, whole genome shotgun sequence [more]
CM010796.2	E-Value: 9.422e-125, PID: 87.79 Description: Cannabis sativa cultivar Purple Kush chromosome 5, whole genome shotgun sequence [more]
CM010792.2	E-Value: 9.422e-125, PID: 87.79 Description: Cannabis sativa cultivar Purple Kush chromosome 2, whole genome shotgun sequence [more]

blastn of TPS CDS against pkv5 mRNA

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 mRNA
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BLAST of MN967479.1 vs. Genbank
Match Name: PKGMv1-66366_t
Description: No definition line

HSP 1 Score: 169.165 bits (91), Expect = 1.405e-40
Identity = 236/303 (77.89%), Postives = 236/303 (77.89%), Query Frame = 1

Query:        1 ATGTCCACTCAAATCTTAGCTTCATCATCATCATCCAAAAATGACAAAATACATAAAATTGTTCGACCAACAACAA-ATTATCATCCATCTATTTGGGGAGACCGATTCTTACATTTCAATATTCCAGAAGAAGAATTGAGTT-A-TAA-ACAAGGCCAAGTTG-AAGAATTGAAAGAAGTGGTAAGAA--A-GGAGAT-ATTTGGAGAATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAAT 294
                |||||||||||||||||||| ||||||||||| | |  |||||| ||   | ||||||||||||| || |||| || ||| |||||||  |||||||||||| | ||||||||||| ||||||| ||||| |||| ||| ||| |  ||   || |  |||| |  ||||  |||| |  |||  ||||  |   | || ||    ||  ||||||  ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||| | ||||||| |||||
Sbjct:        1 ATGTCCACTCAAATCTTAGCATCATCATCATC-TTC--AAATGAAAACCCAAATAAAATTGTTCGTCCTACAAAAACATT-TCATCCACATATTTGGGGAGAACAATTCTTACATTACAATATTTCAGAACAAGATTTG-GTTGAGGAATTAAAAG--AAGTGGTTAGAAGGGAAATATTTGG--AGAATCATCAATATCATCATCAG-CTTATTA--TGATGGTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGGCTTATCATTTTGAAACTGAAATAGAAAAT 291

HSP 2 Score: 62.0597 bits (33), Expect = 2.453e-8
Identity = 47/54 (87.04%), Postives = 47/54 (87.04%), Query Frame = 1

Query:      347 ATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGAT 400
                |||||  ||| ||| ||| ||||  |||||||||||||||||||||||||||||
Sbjct:      329 ATGAAGATTTACATCATGTTTCTGATCGGTTTAGACTTCTACGACAACATGGAT 382


Match Name	Summary
PKGMv1-66366_t	E-Value: 1.405e-40, PID: 77.89 Description: No definition line [more]

blastn of TPS CDS against cs10 genome

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 genome
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BLAST of MN967479.1 vs. Genbank
Match Name: NC_044377.1
Description: Cannabis sativa chromosome 6, cs10, whole genome shotgun sequence

HSP 1 Score: 569.888 bits (308), Expect = 2.449e-160
Identity = 366/395 (92.66%), Postives = 366/395 (92.66%), Query Frame = 1

Query:      414 AGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGT 808
                ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |  |||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct: 78969936 AGATATATTTGACAAGTTCAAAGATGAGAATGGCAACTTTAAAGAATGTTTGGCGAGTGACACCGTTGGTTTGCTTAGCTTATATGAGGCCTCACATTTGAGTTGTGTTGGAGAAAATTTACTAGATGAAGCCCTTTCTTTCACTACCAAACACCTAACTGAATTTTTGGAAAATAATAAAAAAGAACACCCCAATGATGATCCATTATCAAAGGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTCCATGCAAGGTATTTCATTTCAATATATGAAAAAGATGCCTCACATAACAAAGTATTGCTACAACTTGCAAAGTTAGATTTCAATCTATTACAATCCATGCACAAAAAGGAGCTTAGTGAAATCTCAAGGT 78969542

HSP 2 Score: 462.783 bits (250), Expect = 4.277e-128
Identity = 340/385 (88.31%), Postives = 340/385 (88.31%), Query Frame = 1

Query:      414 AGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAA 798
                |||||||||||| || |||||||||||| |||| ||||||||| |||| ||||  ||||| | | |  |||||||||||||||| || |||||||||||||| ||||||||||||||| | || |||||||| ||  ||||||| || |||||||||| | | |||||||| || || ||| || | |||   || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 77957145 AGATATATTTGAAAAATTCAAAGATGAGGATGGGAACTTTAAAAAATGCTTGGTAAGTGATACCCTTGGTTTGCTTAGCTTATATGAAGCCTCACATTTGAGTTGTGTTGGAGAAAATATACTTGATGAAGCACTTGCTTTCACAACAACACACCTAAATGAGTTTTTGGCGAAGAAAAAAGAACACCATGAAGACGATGATCCATTATCGAAAGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTAAATCTTCATGCAAGGCATTTCATTTCGATATATGAAAAAGATGCCTCACATAACAAAGTATTGTTACAACTTGCAAAGTTAGATTTCAATCTATTACAATGCATGCACAAAAAGGAACTTAGTGAA 77957529

HSP 3 Score: 433.236 bits (234), Expect = 3.353e-119
Identity = 263/275 (95.64%), Postives = 263/275 (95.64%), Query Frame = 1

Query:      141 TTATAAACAAGGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTTTAG 415
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 78976641 TTATAAACAAGGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAACACATTTACAACA---------TTAATGATAATAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATATAGGGTTTCTTTAG 78976376

HSP 4 Score: 379.683 bits (205), Expect = 4.431e-103
Identity = 217/223 (97.31%), Postives = 217/223 (97.31%), Query Frame = 1

Query:      805 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGT 1027
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct: 78945919 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCACTTTCCTCAATCGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACATAAGCTCCTTATTGAAGCAATTGACAGGT 78945697

HSP 5 Score: 368.604 bits (199), Expect = 9.591e-100
Identity = 215/223 (96.41%), Postives = 215/223 (96.41%), Query Frame = 1

Query:      805 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGT 1027
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||
Sbjct: 78969438 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTGTACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCACTTTCCTCAATCGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACATAAGCTCCTTATTGAAGCAATTGATAGGT 78969216

HSP 6 Score: 219.025 bits (118), Expect = 1.022e-54
Identity = 188/223 (84.30%), Postives = 188/223 (84.30%), Query Frame = 1

Query:      805 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGT 1027
                ||||||||||| |||| | ||  || ||| || || || ||||||||| |||| |||||||| || ||  ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||  || ||||||||  || |||||||||||||||||||||||||| ||||||| | ||||||||||||| | ||||| | | | |||||||| ||||
Sbjct: 78007359 AGGTGGTGGAAAGAATCAAACTTTGTACAAAAATTCCCTTTTGCAAGAGATAGAATTGTGGAGCTCTATCTTTGGATGTTAGGAGTCTATTATGAACCCCAATACTCTTTGGCAAGAAACATTTTAGCCAAAATCATAGCTTTTTCCTCAATTGCTGATGATATTTATGATGCATATGGAACATTTGAAGAACTTGAACTCCTAACTCAAGCAATTGAAAGGT 78007137

HSP 7 Score: 206.098 bits (111), Expect = 7.957e-51
Identity = 165/192 (85.94%), Postives = 165/192 (85.94%), Query Frame = 1

Query:      805 AGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAA 996
                ||||||||||| |||| | ||  || ||| || || || ||||||||| |||| |||||||| || ||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||  || ||||||||  || |||||||||||||||||||||||||| |||||||||  |||||||||
Sbjct: 78018536 AGGTGGTGGAAAGAATCAAACTTTGTACAAAAATTCCCTTTTGCAAGAGATAGAATTGTGGAGCTCTATCTTTGGATGTTAGGAGTCTATTATGAACCCCAATACTCTTTGGCAAGAAATATTTTAGCCAAAATCATAGCTTTTTCCTCAATTGCTGATGATATTTATGATGCATATGGTACTTTTGAAGAA 78018345

HSP 8 Score: 195.019 bits (105), Expect = 1.722e-47
Identity = 154/178 (86.52%), Postives = 154/178 (86.52%), Query Frame = 1

Query:      157 GTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTA-TGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGAT 333
                ||||| ||||| ||||||||| | ||||  || ||||||||||| |||||| | ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| ||||||||| ||||||||||||||| |  ||| |||||
Sbjct: 77955198 GTTGAGGAATTAAAAGAAGTGATTAGAAGAGAAATATTTGGAGA-TTATTATTATGATGGTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAAACTGAAATAGAAAATAAGCTTCAATGCATTTACAACAAAATTAATATTGATGAT 77955374

HSP 9 Score: 163.625 bits (88), Expect = 4.857e-38
Identity = 171/211 (81.04%), Postives = 171/211 (81.04%), Query Frame = 1

Query:      202 TTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTT 412
                ||||||  ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||   ||||||| |||||  | |  || | || ||||||||||  |  | | |||||  |  | ||||| |||||  ||||||||||| |||  |  |||||||||||||||||||||||||||  ||||||||||
Sbjct: 78008671 TTATTA--TGATGCTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAATCTGAAATAGAAAATATGATAGAACAAATCTACAACAAAACCAATAGTGATGAT--T-TTCTCAAAGATGAAGATTTGCATGATGTTTCCTTGTGGTTTAGACTTCTACGACAACATGGATTTAGGGTTTCTT 78008466

HSP 10 Score: 163.625 bits (88), Expect = 4.857e-38
Identity = 171/211 (81.04%), Postives = 171/211 (81.04%), Query Frame = 1

Query:      202 TTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTT 412
                ||||||  ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||   ||||||| |||||  | |  || | || ||||||||||  |  | | |||||  |  | ||||| |||||  ||||||||||| |||  |  |||||||||||||||||||||||||||  ||||||||||
Sbjct: 78019860 TTATTA--TGATGCTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAATCTGAAATAGAAAATATGATAGAACAAATCTACAACAAAACCAATAGTGATGAT--T-TTCTCAAAGATGAAGATTTGCATGATGTTTCCTTGTGGTTTAGACTTCTACGACAACATGGATTTAGGGTTTCTT 78019655

HSP 11 Score: 154.392 bits (83), Expect = 2.923e-35
Identity = 112/125 (89.60%), Postives = 112/125 (89.60%), Query Frame = 1

Query:      689 ATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAA-----GTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGT 808
                |||||||||||||||||||||||||||| ||||||||||||     |||||| | |||||||||||||||||||||||| |||| |||| | ||||||||||||| |||||||||||||||||||
Sbjct: 78946167 ATTTCATTTCAATATATGAAAAAGATGCCTCACATAACAAATTAAAGTATTGCTACAACTTGCAAAGTTAGATTTCAATCTATTACAATCCTTGCACAAAAAGGAGCTTAGTGAAATCTCAAGGT 78946043

HSP 12 Score: 110.073 bits (59), Expect = 6.418e-22
Identity = 82/93 (88.17%), Postives = 82/93 (88.17%), Query Frame = 1

Query:      202 TTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAAT 294
                ||||||  ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||| | ||||||| |||||
Sbjct: 77999328 TTATTA--TGATGGTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGGCTTATCATTTTGAAACTGAAATAGAAAAT 77999238

HSP 13 Score: 62.0597 bits (33), Expect = 1.823e-7
Identity = 47/54 (87.04%), Postives = 47/54 (87.04%), Query Frame = 1

Query:      347 ATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGAT 400
                |||||  ||| ||| ||| ||||  |||||||||||||||||||||||||||||
Sbjct: 77999200 ATGAAGATTTACATCATGTTTCTGATCGGTTTAGACTTCTACGACAACATGGAT 77999147


Match Name	Summary
NC_044377.1	E-Value: 2.449e-160, PID: 92.66 Description: Cannabis sativa chromosome 6, cs10, whole genome shotgun sequence [more]

blastn of TPS CDS against cs10 mRNA

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of MN967479.1 vs. Genbank
Match Name: XM_030653866.1
Description: PREDICTED: Cannabis sativa alpha-humulene synthase (LOC115724563), transcript variant X1, mRNA

HSP 1 Score: 1513.53 bits (819), Expect = 0.000e+0
Identity = 940/998 (94.19%), Postives = 940/998 (94.19%), Query Frame = 1

Query:       31 TCATCCAAAAATGACAAAATACATAAAATTGTTCGACCAACAACAAATTATCATCCATCTATTTGGGGAGACCGATTCTTACATTTCAATATTCCAGAAGAAGAATTGAGTTATAAACAAGGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTTTAGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGTG 1028
                ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |  |||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||
Sbjct:       75 TCATCCAAAAATGACAATATACATAAAATTGTTCGGCCAACAACAAATTATCATCCTTCTATTTGGGGAGACCGATTTTTGCATTACGATATTCCAAAAGAAGAATTGAATTATAAACAAGGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAACACATTTACAA---------CATTAATGATAATAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATATAGGGTTTCTTTAGATATATTTGACAAGTTCAAAGATGAGAATGGCAACTTTAAAGAATGTTTGGCGAGTGACACCGTTGGTTTGCTTAGCTTATATGAGGCCTCACATTTGAGTTGTGTTGGAGAAAATTTACTAGATGAAGCCCTTTCTTTCACTACCAAACACCTAACTGAATTTTTGGAAAATAATAAAAAAGAACACCCCAATGATGATCCATTATCAAAGGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTCCATGCAAGGTATTTCATTTCAATATATGAAAAAGATGCCTCACATAACAAAGTATTGCTACAACTTGCAAAGTTAGATTTCAATCTATTACAATCCATGCACAAAAAGGAGCTTAGTGAAATCTCAAGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTGTACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCACTTTCCTCAATCGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACATAAGCTCCTTATTGAAGCAATTGATAGGTG 1063

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BLAST of MN967479.1 vs. Genbank
Match Name: XM_030653867.1
Description: PREDICTED: Cannabis sativa alpha-humulene synthase (LOC115724563), transcript variant X2, mRNA

HSP 1 Score: 1155.28 bits (625), Expect = 0.000e+0
Identity = 730/780 (93.59%), Postives = 730/780 (93.59%), Query Frame = 1

Query:       31 TCATCCAAAAATGACAAAATACATAAAATTGTTCGACCAACAACAAATTATCATCCATCTATTTGGGGAGACCGATTCTTACATTTCAATATTCCAGAAGAAGAATTGAGTTATAAACAAGGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTTTAGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGTGG 810
                ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |  |||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct:       75 TCATCCAAAAATGACAATATACATAAAATTGTTCGGCCAACAACAAATTATCATCCTTCTATTTGGGGAGACCGATTTTTGCATTACGATATTCCAAAAGAAGAATTGAATTATAAACAAGGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAACACATTTACAA---------CATTAATGATAATAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATATAGGGTTTCTTTAGATATATTTGACAAGTTCAAAGATGAGAATGGCAACTTTAAAGAATGTTTGGCGAGTGACACCGTTGGTTTGCTTAGCTTATATGAGGCCTCACATTTGAGTTGTGTTGGAGAAAATTTACTAGATGAAGCCCTTTCTTTCACTACCAAACACCTAACTGAATTTTTGGAAAATAATAAAAAAGAACACCCCAATGATGATCCATTATCAAAGGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTCCATGCAAGGTATTTCATTTCAATATATGAAAAAGATGCCTCACATAACAAAGTATTGCTACAACTTGCAAAGTTAGATTTCAATCTATTACAATCCATGCACAAAAAGGAGCTTAGTGAAATCTCAAGGTGG 845

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BLAST of MN967479.1 vs. Genbank
Match Name: XM_030622631.1
Description: PREDICTED: Cannabis sativa germacrene-A synthase-like (LOC115695574), mRNA

HSP 1 Score: 948.452 bits (513), Expect = 0.000e+0
Identity = 862/1030 (83.69%), Postives = 862/1030 (83.69%), Query Frame = 1

Query:        1 ATGTCCACTCAAATCTTAGCTTCATCATCATCATCCAAAAATGACAAAATACATAAAATTGTTCGACCAACAACAAATTATCATCCATCTATTTGGGGAGACCGATTCTTACATTTCAATATTCCAGAAGAAGAATTGAGTTATAAACAAGGCCAA-GTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAATTATTA-TGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTTTAGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAACATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGTG 1028
                ||| |||||||||||||||  | ||||||||| | |  |||||||||   | ||| ||||||||| || |||| ||| |  || |||  |||||||||||| ||||||||||||| ||| ||| || || |||| |||  || | |||||    || ||||| ||||| ||||||||| | ||||  || ||||||||||| |||||| | ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| ||||||||| |||||||||||||||      |||| ||  | |  |     |||||  ||| ||  ||| ||| ||||| |||||||||||||||||||||||||  |   ||||||  ||||||||||| || |||||||||||| |||| ||||||||| |||| ||||  ||||| | | |  |||||||||||||||| || |||||||||||||| ||||||||||||||| | || |||||||| ||  ||||||| || |||||||||| | | |||||||| || || ||| || | |||   || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||   ||||||||||| |||| |||   || |||||| ||||||||||||||| |||||||||| ||| | ||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| | || ||||||||  | ||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||| | | |||||||||| |||||
Sbjct:        1 ATGCCCACTCAAATCTTAG--T-ATCATCATC-TTC--AAATGACAACCCAAATATAATTGTTCGTCCTACAAAAAAATTCCACCCAAATATTTGGGGAGAACGATTCTTACATTACAACATTTCACAACAAGATTTGTATTGTCAACAA-CAAAAGGTTGAGGAATTAAAAGAAGTGATTAGAAGAGAAATATTTGGAGA-TTATTATTATGATGGTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAAACTGAAATAGAAAATAAGCTTCAATGCATTTACAACAAAAT------TAAT-AT--TGA--T----GATGAAGATTTACACCATGTTTCAATTCGATTTAGACTTCTACGACAACATGGATTTACAATTTCTTCTGATATATTTGAAAAATTCAAAGATGAGGATGGGAACTTTAAAAAATGCTTGGTAAGTGATACCCTTGGTTTGCTTAGCTTATATGAAGCCTCACATTTGAGTTGTGTTGGAGAAAATATACTTGATGAAGCACTTGCTTTCACAACAACACACCTAAATGAGTTTTTGGCGAAGAAAAAAGAACACCATGAAGACGATGATCCATTATCGAAAGAAATATCTCGAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTAAATCTTCATGCAAGGCATTTCATTTCGATATATGAAAAAGATGCCTCACATAACAAAGTATTGTTACAACTTGCAAAGTTAGATTTCAATCTATTACAATGCATGCACAAAAAGGAACTTAGTGAAGTCAGCAGGTGGTGGAAAGAATCAGATTTTGTACACAAATTTCCATTTGCAAGAGATAGGATTGTAGAATTGTACCTTTGGATATTAGGAGTTTATTATGAACCCCAATACTGTTTGGCAAGAAATATTTTAATCAAAATCATAGCTTTGGCCTCAATTGCTGATGATATTTATGATGCATATGGTACACTTGAAGAACTTGAGCTCCTAACTCATGCAATTGAAAGGTG 1007

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BLAST of MN967479.1 vs. Genbank
Match Name: XM_030654009.1
Description: PREDICTED: Cannabis sativa alpha-humulene synthase-like (LOC115724669), mRNA

HSP 1 Score: 765.633 bits (414), Expect = 0.000e+0
Identity = 846/1052 (80.42%), Postives = 846/1052 (80.42%), Query Frame = 1

Query:        1 ATGTCCACTCAAATCTTAGCTTCATCATCATCATCCAAAAATGACAAAATACATAAAATTGTTCGACCAACAACAA-ATTATCATCCATCTATTTGGGGAGACCGATTCTTACATTTCAATATTCCAGAAGAAGAATTGAGTTATAAACAAGGCCAA-GTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAAT------TAT--T-AT--G-------TGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTTTAGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACA-TCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAG-A-AC-ATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTAAGCTCCTTAATGATGCAATTGACAGGTG 1028
                ||||||||||||||||||||   ||||||||| | |  |||||||||   | ||||||||||||| || |||| || ||| |||||||  |||||||||||| ||||||||||||| ||| ||| || || |||| |||  || | |||||    || ||||| ||||| || |||||||| ||||  || |||||||||||||      |||  | ||  |       ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||   ||||||| |||||  | |  || | || ||||||||||    || || ||||  |  | ||||| |||||  ||||||||||| |||  |  |||||||||||||||||||||||||||  ||||||||||  ||||||||||| || |||||||||||  |||| ||||||||| ||| |||||  ||||| | || |  ||||||||||| |||| || |||||||||||||| ||||||||||||||| | || |||||||| ||  ||||||| || |||||| | ||  | ||||||||||   | ||||||| | || ||   || ||||||   || || ||||||||||| | |||||||||||| |||||||||||||||||||| ||| ||||||| | |||||||||||| |||| |||||||||||| |||||||||||||||||| | ||||||||||||  |||||| ||| || | |||| |  |||||||||||| ||||||||||||   ||||||||||| |||| | ||  || ||| || || || ||||||||| |||| |||||||| || ||  ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||  || ||||||||  || |||||||||||||||||||||||||| ||||||| | ||||||||||||| | ||||| | | | |||||||| |||||
Sbjct:        1 ATGTCCACTCAAATCTTAGC---ATCATCATC-TTC--AAATGACAACCCAAATAAAATTGTTCGTCCTACAAAAACATT-TCATCCACATATTTGGGGAGAACGATTCTTACATTACAACATTTCACAACAAGATTTGTATTGTCAACAA-CAAAAGGTTGAGGAATTAAAGGAAGTGGTTAGAAGAGAAATATTTGGAGAATCATCAATATCATCATCAGCTTATTATGATGCTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAATCTGAAATAGAAAATATGATAGAACAAATCTACAACAAAA---CCAATAGTGATGATTTTCTCAAAGATGAAGATTTGCATGATGTTTCCTTGTGGTTTAGACTTCTACGACAACATGGATTTAGGGTTTCTTCTGATATATTTGAAAAATTCAAAGATGAAGATGGCAACTTTAAAAAATATTTGGTAAGTGATACTC-TTGGTTTGCTTAGCCTATATGAAGCCTCACATTTGAGTTGTGTTGGAGAAAATATACTTGATGAAGCACTTGCTTTCACAACAACACACTTGACCGAGTTTTTGGCAA--GA-AAAAAAGAACACTATGATGACGATGATTTCTTGTCAAAAGAAATATCTCGAGCCCTAGAGAGACCCTTAAGAAAGACCCTAGTAAATGTTCATGCTAAGCATTTCATTTCGATATGTGAAAAAGATGCCTCACATAACAAAGTATTGCTACAACTTGCAAAGCCAGATTTTAATCTACTACAATCCCAGCACAAAAAGGAGCTTAGTGAAATCAGCAGGTGGTGGAAAGAATCAAACTTTGTACAAAAATTCCCTTTTGCAAGAGATAGAATTGTGGAGCTCTATCTTTGGATGTTAGGAGTCTATTATGAACCCCAATACTCTTTGGCAAGAAACATTTTAGCCAAAATCATAGCTTTTTCCTCAATTGCTGATGATATTTATGATGCATATGGAACATTTGAAGAACTTGAACTCCTAACTCAAGCAATTGAAAGGTG 1037

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BLAST of MN967479.1 vs. Genbank
Match Name: XM_030622635.1
Description: PREDICTED: Cannabis sativa alpha-humulene synthase-like (LOC115695577), mRNA

HSP 1 Score: 756.4 bits (409), Expect = 0.000e+0
Identity = 820/1017 (80.63%), Postives = 820/1017 (80.63%), Query Frame = 1

Query:        1 ATGTCCACTCAAATCTTAGCTTCATCATCATCATCCAAAAATGACAAAATACATAAAATTGTTCGACCAACAACAA-ATTATCATCCATCTATTTGGGGAGACCGATTCTTACATTTCAATATTCCAGAAGAAGAATTGAGTTATAAACAAGGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGAAT-----T-AT--T-AT--G-------TGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAGAACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTTCAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGAAACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGATACAGGGTTTCTTTAGATATATTTGACAAGTTCAAAGATGAGAATGGAAACTTTAAAGAATGTTTGGGGAGTGACA-TCATCAGTTTGCTTAGCTTATACGAGGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTATCTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAAC-ATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAGGCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAATATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAGTTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAATCTCAAGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAAGAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAACCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGCCTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAA 996
                ||||||||||||||||||||   ||||||||| | |  |||||| ||   | ||||||||||||| || |||| || ||| |||||||  |||||||||||| | ||||||||||| ||| ||| || || |||| |||  || | ||||||   | ||||| ||||| ||||||||||| ||||  || |||||||||||||     | ||  | ||  |       ||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||   ||||||| |||||  | |  || | || ||||||||||    || || ||||  |  | ||||| |||||  ||||||||||| |||  |  |||||||||||||||||||||||||||  ||||||||||  ||||||||||| || |||||||||||  |||| ||||||||| ||| |||||  ||||| | || |  ||||||||||| |||| || || ||||||||||| ||||||| ||||||| | || |||||||| ||  ||||||| || |||||| | | | | |||||||||||  | |||| |  || ||   || ||||||   || || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| | |||||| ||||| |  |||||||||||||| |||||||| ||||||||| | |||||||||||| ||||||||||| |||| |||| |||||||||| |||| ||||||||||||   ||||||||||| |||| | ||  || ||| || || || ||||||||| |||| |||||||| || ||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||  || ||||||||  || |||||||||||||||||||||||||| |||||||||  |||||||||
Sbjct:       59 ATGTCCACTCAAATCTTAGC---ATCATCATC-TTC--AAATGAAAACCCAAATAAAATTGTTCGTCCTACAAAAACATT-TCATCCACATATTTGGGGAGAACAATTCTTACATTACAACATTTCACAACAAGATTTGTATTGTCAACAAGAAAAGGTTGAGGAATTAAAAGAAGTGGTTAGAAGAGAAATATTTGGAGAATCATCATCATCATCATCAGCTTATTATGATGCTTGGAAAAATCAATTGAAGATAATTGATGTGGTAGAACGTTTGGGATTGTCTTATCATTTTGAATCTGAAATAGAAAATATGATAGAACAAATCTACAACAAAA---CCAATAGTGATGATTTTCTCAAAGATGAAGATTTGCATGATGTTTCCTTGTGGTTTAGACTTCTACGACAACATGGATTTAGGGTTTCTTCTGATATATTTGAAAAATTCAAAGATGAAGATGGCAACTTTAAAAAATATTTGGTAAGTGATACTC-TTGGTTTGCTTAGCCTATATGAAGCTTCACATTTGAGTTGTGTTGTAGAAAATATACTTGATGAAGCACTTGCTTTCACAACAACACACTTGATTGAGTTTTTGGCAAA-GACAAAAGATCACTATGATGACGATGATTTCTTGTCAAAAGAAATATCTCAAGCCCTAGAGAGACCCTTAAGAAAGACCCTAGTAAATCTTCATGCTAAGCATTTTATTTCGACGTATGAAAAAGATGCCTCACATAATAAAGTATTGCTACAACTTGCAAAGCTAGATTTCAATCTATTACAATCCATGCACAAAGAGGAGCTTAGTGAAATCAGCAGGTGGTGGAAAGAATCAAACTTTGTACAAAAATTCCCTTTTGCAAGAGATAGAATTGTGGAGCTCTATCTTTGGATGTTAGGAGTCTATTATGAACCCCAATACTCTTTGGCAAGAAATATTTTAGCCAAAATCATAGCTTTTTCCTCAATTGCTGATGATATTTATGATGCATATGGTACTTTTGAAGAA 1063


Match Name	Summary
XM_030653866.1	E-Value: 0.000e+0, PID: 94.19 Description: PREDICTED: Cannabis sativa alpha-humulene synthase (LOC115724563), transcript variant X1, mRNA [more]
XM_030653867.1	E-Value: 0.000e+0, PID: 93.59 Description: PREDICTED: Cannabis sativa alpha-humulene synthase (LOC115724563), transcript variant X2, mRNA [more]
XM_030622631.1	E-Value: 0.000e+0, PID: 83.69 Description: PREDICTED: Cannabis sativa germacrene-A synthase-like (LOC115695574), mRNA [more]
XM_030654009.1	E-Value: 0.000e+0, PID: 80.42 Description: PREDICTED: Cannabis sativa alpha-humulene synthase-like (LOC115724669), mRNA [more]
XM_030622635.1	E-Value: 0.000e+0, PID: 80.63 Description: PREDICTED: Cannabis sativa alpha-humulene synthase-like (LOC115695577), mRNA [more]

Interpro result TPS-TSA-THC Csativa

Performed on: 2021-09-02
Display provided by the neXtProt Feature Viewer


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..36
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 37..49
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 12..34
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..39
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..67
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 68..69
None	No IPR available	TMHMM	TMhelix		coord: 45..67
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 11..342
None	No IPR available	PANTHER	PTHR31225:SF42		coord: 11..342
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 246..342 e-value: 1.1E-40 score: 139.7
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 31..215 e-value: 1.2E-53 score: 181.7
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 31..342 e-value: 2.3E-112 score: 378.0
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 241..342
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 70..240 e-value: 2.3E-112 score: 378.0
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 28..241

Cannabis sativa cultivar Purple Kush terpene synthase 26 mRNA
complete cds

Reanalysis of 21 trichome RNA-Seq samples, FN-clones109 (TMM50 minvalue)

Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)

Interpro result TPS-TSA-THC Csativa

blastn of TPS CDS against cs10 mRNA

blastn of TPS CDS against cs10 genome

blastn of TPS CDS against pkv5 mRNA

blastn of TPS CDS against pkv5 genome

NCBI Download

Sequences

Sequence	ATGTCCACTCAAATCTTAGCTTCATCATCATCATCCAAAAATGACAAAAT ACATAAAATTGTTCGACCAACAACAAATTATCATCCATCTATTTGGGGAG ACCGATTCTTACATTTCAATATTCCAGAAGAAGAATTGAGTTATAAACAA GGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGA ATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAG AACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTT CAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGA AACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGAT ACAGGGTTTCTTTAGATATATTTGACAAGTTCAAAGATGAGAATGGAAAC TTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGA GGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTAT CTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAA CATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAG GCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAA TATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAG TTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAAT CTCAAGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAA GAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAA CCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGC CTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTA AGCTCCTTAATGATGCAATTGACAGGTGA
Sequence Length	1029
Sequence Checksum	353fb233643c5db02b10146e1fe2b0d1

Sequence

ATGTCCACTCAAATCTTAGCTTCATCATCATCATCCAAAAATGACAAAAT
ACATAAAATTGTTCGACCAACAACAAATTATCATCCATCTATTTGGGGAG
ACCGATTCTTACATTTCAATATTCCAGAAGAAGAATTGAGTTATAAACAA
GGCCAAGTTGAAGAATTGAAAGAAGTGGTAAGAAAGGAGATATTTGGAGA
ATTATTATGTGATGATTGGAATAATCGATTGAAGTTAATTGATGTGGTAG
AACGTTTGGGATTGTCCTATCATTTTGAGAGTGAAATACAAAATGAGCTT
CAATACATTTACAACAAAATAAGCATTAATGATACTAATTTCAAACATGA
AACTTTGCATGATGCTTCTATTCGGTTTAGACTTCTACGACAACATGGAT
ACAGGGTTTCTTTAGATATATTTGACAAGTTCAAAGATGAGAATGGAAAC
TTTAAAGAATGTTTGGGGAGTGACATCATCAGTTTGCTTAGCTTATACGA
GGCCTCACATTTGAGCTGTGTTGGAGAAAATGTTCTAGATGAAGCCCTAT
CTTTCACTACCACACACCTAACTAAATTTTTGGCAAATAATAAAAAAGAA
CATCCCGATGATGATCCATTATCGAAAGAAATATCCCAAGCCCTAGAGAG
GCCCTTAAGAAAGACCCTAGTGAATCTTCATGCAAGGCATTTCATTTCAA
TATATGAAAAAGATGCTTCACATAACAAAGTATTGTTGCAACTTGCAAAG
TTAGATTTCAATTTATTGCAATGCATGCACAAAAAGGAACTTAGTGAAAT
CTCAAGGTGGTGGAAGGAATTAGACAGTGCACACAACTTTCCATTTGCAA
GAAATAGGATTGTGGAACTATACATTTGGATATTAGGAGTCTATTATGAA
CCCCAATACTCTTTTGCAAGAAATATTTTAGTGAAGATCATAGCCCTTGC
CTCAATTGCTGATGATATTTATGATTCATATGGTATATTTGAAGAACTTA
AGCTCCTTAATGATGCAATTGACAGGTGA

Sequence Length

1029

Sequence Checksum

353fb233643c5db02b10146e1fe2b0d1

Summary

Resource Type	mRNA
Accession	MN967479.1
Organism	Cannabis sativa L.
Name	MN967479.1
Identifier	MN967479.1
Time Accessioned	Thursday, November 21, 2024 - 08:30
Time Last Modified	Thursday, November 21, 2024 - 08:30