KY014565.1 | ICGRC

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Sequences

Summary

Annotations

This record has the following annotations.
Term	Name	Definition
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai]
GO:0016829	lyase activity
GO:0010333	terpene synthase activity	Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators]
INTERPRO:IPR008930	Terpenoid_cyclase/PrenylTrfase
INTERPRO:IPR008949	Isoprenoid_synthase_dom_sf
INTERPRO:IPR005630	Terpene_synthase_metal-bd
INTERPRO:IPR036965	Terpene_synth_N_sf
INTERPRO:IPR001906	Terpene_synth_N

Click a tab below to view blast alignments.

blastn of TPS CDS against pkv5 genome

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 genome
Display provided by the neXtProt Feature Viewer

Show Results Table


Match Name	Summary
There are no matches against Database not found for this mRNA.

blastn of TPS CDS against pkv5 mRNA

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table


Match Name	Summary
There are no matches against Database not found for this mRNA.

blastn of TPS CDS against cs10 genome

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 genome
Display provided by the neXtProt Feature Viewer

Show Results Table


Match Name	Summary
There are no matches against Database not found for this mRNA.

blastn of TPS CDS against cs10 mRNA

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table


Match Name	Summary
There are no matches against Database not found for this mRNA.

Interpro result TPS-TSA-THC Csativa

Performed on: 2021-09-02
Display provided by the neXtProt Feature Viewer


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 45..56
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..24
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 25..44
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 16..560
None	No IPR available	PANTHER	PTHR31225:SF9		coord: 16..560
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..15
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 16..35
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 36..44
None	No IPR available	TMHMM	TMhelix		coord: 20..42
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..21
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 40..50
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 22..39
None	No IPR available	TMHMM	TMhelix		coord: 20..39
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..26
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 27..47
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 48..71
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..47
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 26..32
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 14..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..32
None	No IPR available	TMHMM	TMhelix		coord: 13..35
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..28
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..70
None	No IPR available	TMHMM	TMhelix		coord: 5..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 19..48
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..18
None	No IPR available	TMHMM	TMhelix		coord: 13..32
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 26..206 e-value: 2.8E-52 score: 177.2
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 27..246 e-value: 2.5E-73 score: 248.2
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 237..504 e-value: 3.7E-93 score: 311.7
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 247..560 e-value: 6.4E-116 score: 388.6
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 233..561
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 24..231

Cannabis sativa isolate Finola_TPS2 terpene synthase mRNA
complete cds

Reanalysis of 21 trichome RNA-Seq samples, FN-clones109 (TMM50 minvalue)

Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)

Interpro result TPS-TSA-THC Csativa

blastn of TPS CDS against cs10 mRNA

blastn of TPS CDS against cs10 genome

blastn of TPS CDS against pkv5 mRNA

blastn of TPS CDS against pkv5 genome

NCBI Download

Sequences

Sequence	ATGTGTAGTTTGGCCAAAAGCCCTAGTAGTGATACTAGTACAATTGTTAG AAGATCAGCCAACTATGATCCTCCCATTTGGTCTTTTGATTTCATTCAGT CTCTTCCATGCAAATATAAGGGAGAACCCTATACAAGTCGATCGAATAAG CTAAAAGAAGAAGTGAAAAAGATGTTAGTTGGAATGGAAAACTCTTTAGT CCAACTTGAGTTGATTGATACATTACAAAGACTTGGAATATCTTATCATT TTGAGAATGAAATCATTTCTATTTTGAAGAAATATTTCACTAATATTAGT ACTAATAAAAACCCTAAATATGATTTATATGCCACTGCTCTCGAATTTAG GCTTTTACGCGAATATGGATATGCAGTGCCTCAAGAAATTTTTAATGATT TTAAGGACGAGACGGGAAAGTTCAAAGCGAGTATTAAAAATGATGATATT AAGGGAGTATTGGCTTTATATGAAGCTTCATTCTATGTGAAAAATGGCGA AAATATTTTGGAGGAAGCTAGGGTTTTCACAACAGAATATCTCAAAAGAT ATGTAATGATGATTGATCAAAACATGATATTAAATGATAATATGGCAATA TTAGTGAGACATGCCTTGGAGATGCCACTTCATTGGAGGACTATAAGAGC AGAAGCTAAGTGGTTCATTGAAGAATATGAGAAAACACAAGACAAGAATG GCACTTTGCTTGAATTTGCGAAATTGGATTTCAACATGCTTCAATCAATA TTTCAAGAAGATCTAAAACATGTCTCGAGGTGGTGGGAACATTCTAAGCT TGGAAAGAATAAAATGGTTTATGCTAGAGATAGATTGGTAGAGGCTTTTC TATGGCAGGTTGGAATAAGATTTGAGCCACAATTCAGCCACTTTAGGAGA ATATCTGCAAGAATATATGCTCTAATTACAATCATAGATGACATATATGA TGTGTATGGAACATTGGAAGAATTAGAGCTTTTCACCAAGGCTGTTGAGA GATGGGATGTGAAAACCGTAGACGAGTTACCAGATTATATGAAGCTGCCT TTCTTTACTTTATTTAACACCGTAAATGAAATGGCGTATGATGTGTTAGA AGAGCATAATTTTGTCAGCGTTGAATACCTCAAGAACTCGTGGGCAGAGT TATGTAGATGCTATTTGGAAGAGGCAAAATGGTTTTATAGCGGATACAAA CCAACCTTGAAGAAATATATTGAGAACGCCTCGCTTTCAATAGGAGGACA AGTTATTTTTGTGTATGCTTTTTTCTCTCTTACAAAGTCCATAACAAATG AGGCCTTAGAGTCCTTGCAAGAGGGTCATTACGCTGCATGTCGCCAAGGA TCCTTGATGTTACGACTTGCAGATGATCTTGGAACATCATCAGATGAATT GAAAAGAGGTGACATTCTTAAATCGGTTCAATGTTACATGCACGAGACTG GTGTTTCTGAAGATGAAGCTCGTGAGCACATCAAATTTTTGATAAGTGAA ATATGGAAGGAGATGAATGATGAAGATGAATATAACTCTATTTTCTCTAA AGAGTTTGTTCAAGCTTGCAAAAATCTTGGTAGGATGTCATTATTTATGT ATCAACATGGAGATGGACATGCTTCTCAAGATAGCCATTCAAGGAAACGT ATTTCAGATTTAATTATTAACCCTATTCCTTTATAA
Sequence Length	1686
Sequence Checksum	2e4ac6b37143502f908645787058ad08

Sequence

ATGTGTAGTTTGGCCAAAAGCCCTAGTAGTGATACTAGTACAATTGTTAG
AAGATCAGCCAACTATGATCCTCCCATTTGGTCTTTTGATTTCATTCAGT
CTCTTCCATGCAAATATAAGGGAGAACCCTATACAAGTCGATCGAATAAG
CTAAAAGAAGAAGTGAAAAAGATGTTAGTTGGAATGGAAAACTCTTTAGT
CCAACTTGAGTTGATTGATACATTACAAAGACTTGGAATATCTTATCATT
TTGAGAATGAAATCATTTCTATTTTGAAGAAATATTTCACTAATATTAGT
ACTAATAAAAACCCTAAATATGATTTATATGCCACTGCTCTCGAATTTAG
GCTTTTACGCGAATATGGATATGCAGTGCCTCAAGAAATTTTTAATGATT
TTAAGGACGAGACGGGAAAGTTCAAAGCGAGTATTAAAAATGATGATATT
AAGGGAGTATTGGCTTTATATGAAGCTTCATTCTATGTGAAAAATGGCGA
AAATATTTTGGAGGAAGCTAGGGTTTTCACAACAGAATATCTCAAAAGAT
ATGTAATGATGATTGATCAAAACATGATATTAAATGATAATATGGCAATA
TTAGTGAGACATGCCTTGGAGATGCCACTTCATTGGAGGACTATAAGAGC
AGAAGCTAAGTGGTTCATTGAAGAATATGAGAAAACACAAGACAAGAATG
GCACTTTGCTTGAATTTGCGAAATTGGATTTCAACATGCTTCAATCAATA
TTTCAAGAAGATCTAAAACATGTCTCGAGGTGGTGGGAACATTCTAAGCT
TGGAAAGAATAAAATGGTTTATGCTAGAGATAGATTGGTAGAGGCTTTTC
TATGGCAGGTTGGAATAAGATTTGAGCCACAATTCAGCCACTTTAGGAGA
ATATCTGCAAGAATATATGCTCTAATTACAATCATAGATGACATATATGA
TGTGTATGGAACATTGGAAGAATTAGAGCTTTTCACCAAGGCTGTTGAGA
GATGGGATGTGAAAACCGTAGACGAGTTACCAGATTATATGAAGCTGCCT
TTCTTTACTTTATTTAACACCGTAAATGAAATGGCGTATGATGTGTTAGA
AGAGCATAATTTTGTCAGCGTTGAATACCTCAAGAACTCGTGGGCAGAGT
TATGTAGATGCTATTTGGAAGAGGCAAAATGGTTTTATAGCGGATACAAA
CCAACCTTGAAGAAATATATTGAGAACGCCTCGCTTTCAATAGGAGGACA
AGTTATTTTTGTGTATGCTTTTTTCTCTCTTACAAAGTCCATAACAAATG
AGGCCTTAGAGTCCTTGCAAGAGGGTCATTACGCTGCATGTCGCCAAGGA
TCCTTGATGTTACGACTTGCAGATGATCTTGGAACATCATCAGATGAATT
GAAAAGAGGTGACATTCTTAAATCGGTTCAATGTTACATGCACGAGACTG
GTGTTTCTGAAGATGAAGCTCGTGAGCACATCAAATTTTTGATAAGTGAA
ATATGGAAGGAGATGAATGATGAAGATGAATATAACTCTATTTTCTCTAA
AGAGTTTGTTCAAGCTTGCAAAAATCTTGGTAGGATGTCATTATTTATGT
ATCAACATGGAGATGGACATGCTTCTCAAGATAGCCATTCAAGGAAACGT
ATTTCAGATTTAATTATTAACCCTATTCCTTTATAA

Sequence Length

1686

Sequence Checksum

2e4ac6b37143502f908645787058ad08

Summary

Resource Type	mRNA
Accession	KY014565.1
Organism	Cannabis sativa L.
Name	KY014565.1
Identifier	KY014565.1
Time Accessioned	Thursday, November 21, 2024 - 11:24
Time Last Modified	Thursday, November 21, 2024 - 11:24