Controlled Vocabularies
The following controlled vocabularies are used on this site. Click a vocabulary short name for more details.
| Short Name | Vocabulary Name(s) | Description | Loaded Terms |
|---|---|---|---|
| AGRO | AGRO | Agronomy Ontology | 1 |
| BFO | bfo | 13 | |
| CARO | caro | 3 | |
| CHEBI | uo, chebi, peco, chebi_ontology | 126,037 | |
| CO_010 | germplasm_ontology | Crop Germplasm Ontology | 4 |
| data | EDAM | Bioinformatics operations, data types, formats, identifiers and topics. | 22 |
| dc | dc | DCMI Metadata Terms. | 1 |
| ECO | ECO, eco | 1,782 | |
| EDAM | operation | Bioinformatics operations, data types, formats, identifiers and topics. | 2 |
| EFO | efo, EFO | Experimental Factor Ontology | 5 |
| ENVO | envo | 48 | |
| ERO | ero | The Eagle-I Research Resource Ontology | 3 |
| FBcv | FBcv | 1 | |
| FOODON | foodon | 5 | |
| format | EDAM | A defined way or layout of representing and structuring data in a computer file, blob, string, message, or elsewhere. The main focus in EDAM lies on formats as means of structuring data exchanged between different tools or resources. | 1 |
| GO | biological_process, molecular_function, cellular_component | 44,244 | |
| HP | HP | 1 | |
| hydra | hydra | A Vocabulary for Hypermedia-Driven Web APIs | 6 |
| IAO | IAO | The Information Artifact Ontology (IAO). | 3 |
| internal | quality | 1 | |
| local | local, organism_property, analysis_property, tripal_phylogeny, feature_relationship, feature_property, featuremap_units, featurepos_property, featuremap_property, library_property, library_type, project_property, study_property, stock_relationship, tripal_analysis, nd_experiment_types, nd_geolocation_property | Terms created for this site. | 129 |
| MVC | MIXSCV | 1 | |
| ncbi_properties | ncbi_properties | Attribute and property terms for NCBI. | 472 |
| NCBITaxon | ncbitaxon | NCBI organismal classification. | 104 |
| NCIT | ncit, NCIT | NCI Thesaurus OBO Edition. | 40 |
| null | null, chado_properties, feature_property | No online database. | 33 |
| OBCS | OBCS | Ontology of Biological and Clinical Statistics. | 2 |
| OBI | obi, OBI | The Ontology for Biomedical Investigation. | 8 |
| OGI | ogi | Ontology for genetic interval. | 1 |
| operation | EDAM, operation | A function that processes a set of inputs and results in a set of outputs, or associates arguments (inputs) with values (outputs). Special cases are: a) An operation that consumes no input (has no input arguments). | 6 |
| PATO | quality | 1,794 | |
| PECO | peco | 117 | |
| phenotype_chebipecouo | uo, chebi, peco, chebi_ontology | Analyzed phenotypes database | 30 |
| PO | po | 1,651 | |
| PPEO | PPEO | 31 | |
| rdfs | rdfs | Resource Description Framework Schema | 3 |
| RO | relationship | 1 | |
| SBO | sbo | Systems Biology. | 3 |
| schema | schema | Schema.org. | 10 |
| sep | sep | Sample processing and separation techniques. | 4 |
| SIO | SIO | Semanticscience Integrated Ontology. | 10 |
| SO | sequence | The sequence ontology. | 2,233 |
| SWO | swo | Bioinformatics operations, data types, formats, identifiers and topics | 1 |
| synonym_type | synonym_type | 4 | |
| TAXRANK | taxonomic_rank | A vocabulary of taxonomic ranks (species, family, phylum, etc) | 61 |
| TCONTACT | tripal_contact | Tripal Contact Ontology. A temporary ontology until a more formal appropriate ontology an be identified. | 28 |
| TO | plant_trait_ontology | 1,502 | |
| TPUB | tripal_pub | Tripal Publication Ontology. A temporary ontology until a more formal appropriate ontology an be identified. | 212 |
| tripal | stock_type, tripal, biomaterial_property, protocol_type | 539 | |
| tripal_map | tripal_map | 2 | |
| UO | uo | Units of Measurement Ontology | 1 |