Cannabis sativa (Purple Kush, pkv5)

Summary
Resource Type
Organism
Abbreviation
pkv5
Genus
Cannabis
Species
sativa (Purple Kush, pkv5)
Common Name
Cannabis sativa (Purple Kush, pkv5)
Description

GCA_000230575.5 Purple Kush is a marijuana strain that is widely used for its medicinal effects.

Accessions chromosome assignment
Chromosome 1 CM010790.2
Chromosome 2 CM010792.2
Chromosome 3 CM010793.2
Chromosome 4 CM010794.2
Chromosome 5 CM010796.2
Chromosome 6 CM010797.2
Chromosome 7 CM010799.2
Chromosome 8 CM010795.2
Chromosome 9 CM010798.2
Chromosome 10 CM010791.2

Publication
  1. Laverty KU, Stout JM, Sullivan MJ, Shah H, Gill N, Holbrook L, Deikus G, Sebra R, Hughes TR, Page JE, van Bakel H. A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci.. Genome research. 2019 01; 29(1):146-156.
  2. van Bakel H, Stout JM, Cote AG, Tallon CM, Sharpe AG, Hughes TR, Page JE. The draft genome and transcriptome of Cannabis sativa.. Genome biology. 2011 Oct 20; 12(10):R102.
Analysis
NameProgramDate Constructed
Interpro result pkgmv1InterProScanSep 8th, 2020
Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)21trichpkclone109Oct 15th, 2023
Interpro result canSat3 Purple KushInterProScanOct 18th, 2023
Reanalysis of 21 trichome RNA-Seq samples, PKV5R21T (TMM50 values)pkv5r21tMay 1st, 2024